Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
THYM rs74935632 chr2:10954421 G/A 0.000218 117 42.9 38.58 62.72 KM Plot
THYM rs7496538 chr15:25845597 C/G 0.000146 117 41.77 25.83 28.43 KM Plot
THYM rs74996957 chr2:10946526 G/C 0.000197 119 41.77 38.58 62.72 KM Plot
THYM rs7503675 chr17:38224312 A/C 0.000311 119 50.47 33.78 36.73 KM Plot
THYM rs75068320 chr12:86994305 T/G 0 119 38.13 59.63 4.13 KM Plot
THYM rs75117175 chr6:151416276 T/C 0 117 37.63 55 4.13 KM Plot
THYM rs75163322 chr4:70041495 T/C 7.82E-13 117 39.75 42.3 6 KM Plot
THYM rs75176920 chr4:115626041 C/T 0 118 38.33 44.58 4.13 KM Plot
THYM rs75205365 chr4:70054978 C/A 7.82E-13 117 39.75 42.3 6 KM Plot
THYM rs7522371 chr1:162373748 G/C 0.000129 119 46.6 30.55 29.72 KM Plot
THYM rs7527825 chr1:227377552 G/C 0.000123 119 19.63 37.13 42.82 KM Plot
THYM rs75322793 chr7:29683176 G/A 4.22E-13 119 38.23 46.07 6 KM Plot
THYM rs75345006 chr3:122508041 T/C 3.56E-7 118 42.73 36.98 28.43 KM Plot
THYM rs7540282 chr1:227351180 G/T 0.000123 119 19.63 37.13 42.82 KM Plot
THYM rs75410864 chr4:70071405 A/G 5.73E-13 118 39.75 49.6 6 KM Plot